(M)ultiple-site (B)iodiversity (I)ndices Calculator

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Documentation for package ‘MBI’ version 1.0

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MBI-package MBI: (M)ultiple-site (B)iodiversity (I)ndices Calculator
batch.calculation calculate all diversity indices at the same time
cfull calculate Baselga's biodiversity index (nestdness+turnover)
cl calculate Lennon's multiple-site richness index
cn Calculate Baselga's multiple-site nestedness index
crep Calculate Carvalho's multiple-site replacement index
crich Calculate Carvalho's multiple-site richness difference index
ct Calculate Baselga's multiple-site turnover index
do Calculate Diserud-Odegaard's index
harrison Calculate Harrison's dissimilarity index
ht Calculate Harrison's turnover index
MBI MBI: (M)ultiple-site (B)iodiversity (I)ndices Calculator
mjaccard Calculate the average of Jaccard pairwise-site dissimilarity index across all pairs of sites
ml calculate the average Lennon's pairwise-site richness index
mn Calculate the average of Baselga's pairwise-site nestedness index across all pairs of sites
mrep Calculate the average of Carvalho's pairwise-site replacement index across all pairs of sites
mrich Calculate the average of Carvalho's pairwise-site richness difference index across all pairs of sites
msorensen Calculate the average of Sorensen pairwise-site dissimilarity index across all pairs of sites
mt Calculate the average of Baselga's pairwise-site turnover index across all pairs of sites
rarity Calculate rarity degrees (decided by the argument "percent") based on distributional ranges of species and abundance of species
wbeta Calculate Whittaker's beta diversity index
wnodf Calculate Almeida-Neto and Ulrich's nestedness index
wt Calculate Williams's turnover index