SIMEX Algorithm on Pedigree Structures


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Documentation for package ‘PSIMEX’ version 1.1

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PSIMEX-package SIMEX Algorithm on Pedigree Structures
data Trait data
extrapolation Extrapolation phase for the SIMEX algorithm on pedigrees
fit.nls Fitting a non linear function on the data
initial Calculation of the initial error prone value for inbreeding depression
initial_herit Calculation of the initial error prone value for heritability
pedigree Pedigree data
plot.Psimex A plot illustrating the extrapolation phase of the P-SIMEX algorithm
plot.simul.Psimex A plot illustrating the simulation phase of the P-SIMEX algorithm
PSIMEX SIMEX Algorithm on Pedigree Structures
Psimex Pedigree SIMEX
simul.na Simulation phase for the P-SIMEX with missing paternities.
simul.na.bottom Simulation phase for P-SIMEX on inbreeding depression with missing paternities and errors in the last generations of the pedigree.
simul.na.bottom.herit Simulation phase for P-SIMEX on heritability with missing paternities and errors in the last generations of the pedigree.
simul.na.top Simulation phase for P-SIMEX on inbreeding depression with missing paternities and errors in the first generations of the pedigree.
simul.na.top.herit Simulation phase for P-SIMEX on heritability with missing paternities and errors in the first generations of the pedigree.
simul.na.uni Simulation phase for P-SIMEX on inbreeding depression with missing paternities and uniform errors.
simul.na.uni.herit Simulation phase for P-SIMEX on heritability with missing paternities and uniform errors.
simul.replace Simulation phase for the P-SIMEX with misassignment error.
simul.replace.similar Simulation phase for P-SIMEX on inbreeding depression with misassignment error and replacement with similar individuals.
simul.replace.similar.herit Simulation phase for P-SIMEX on heritability with misassignment error and replacement with similar individuals.
simul.replace.uni Simulation phase for P-SIMEX on inbreeding depression with misassignment error and uniform replacement.
simul.replace.uni.herit Simulation phase for P-SIMEX on heritability with misassignment error and uniform replacement.