Partially Clonal Populations Analysis


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Documentation for package ‘RClone’ version 1.0.3

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RClone-package RClone
agg_index Aggregation of clones
agg_index_core Aggregation of clones
autocorrelation Spatial Autocorrelation
autocorrelation_core Spatial Autocorrelation
clonal_index Indices for clonal data
clonal_index_core Indices for clonal data
clonal_sub Clonal Subrange
clonal_sub_core Clonal Subrange
convert_GC File conversion into RClone files
coord_posidonia Posidonia coordinates
corresp_loci Listing unique alleles
edge_effect Edge Effect
edge_effect_core Edge Effect
export_genclone_arlequin export data file to Adegenet, Genetix and Arlequin
export_genclone_genetix export data file to Adegenet, Genetix and Arlequin
export_genclone_genind export data file to Adegenet, Genetix and Arlequin
Fis Fis
Fis_core Fis
freq_finder Allelic Frequencies
freq_RR Allelic Frequencies
freq_RR_core Allelic Frequencies
GenClone Summary function of RClone package
genclone Summary function of RClone package
GenClone_core Summary function of RClone package
genclone_core Summary function of RClone package
genet_dist Genetic distance
genet_dist_core Genetic distance
genet_dist_sim Genetic distance
genet_dist_sim_core Genetic distance
graph_autocorrelation Spatial Autocorrelation
graph_genet_dist Genetic distance
id_clonal Aggregation of clones
id_clonal_MLL Aggregation of clones
id_clonal_mod Clonal Subrange
id_clonal_mod_MLL Clonal Subrange
infile Infile GenClone style file
kinship Loiselle and Ritland kinship coefficients
kinship_Loiselle Loiselle and Ritland kinship coefficients
kinship_Loiselle_core Loiselle and Ritland kinship coefficients
kinship_Ritland Loiselle and Ritland kinship coefficients
kinship_Ritland_core Loiselle and Ritland kinship coefficients
list_all Listing unique alleles
list_all_obj Listing unique alleles
list_all_obj_core Listing unique alleles
list_all_tab Listing unique alleles
list_all_tab2 Listing unique alleles
list_all_tab2_core Listing unique alleles
list_all_tab_core Listing unique alleles
MLG_list Table of MLG (MultiLocus Genotypes)
MLG_list_core Table of MLG (MultiLocus Genotypes)
MLG_tab Table of MLG (MultiLocus Genotypes)
MLG_tab_core Table of MLG (MultiLocus Genotypes)
MLL_generator Clonal Lineage Generation
MLL_generator2 Clonal Lineage Generation
MLL_generator2_core Clonal Lineage Generation
MLL_generator_core Clonal Lineage Generation
nearest_unit Aggregation of clones
Pareto_index Pareto index
Pareto_index_core Pareto index
pgen Probability of a Genotype
pgen_core Probability of a Genotype
pgen_Fis Probability of a Genotype
pgen_Fis_core Probability of a Genotype
popsim Posidonia
popsimgen Summary function of RClone package
posidonia Posidonia
psex Probability of originating from distinct sexual events
psex_core Probability of originating from distinct sexual events
psex_Fis Probability of originating from distinct sexual events
psex_Fis_core Probability of originating from distinct sexual events
RClone RClone
RClone_quickmanual RClone
red_MLL Spatial Autocorrelation
red_MLL_mod Spatial Autocorrelation
resvigncont Results contained in vignette Quick Manual
resvigncont2 Results contained in vignette Quick Manual
sample_loci Sample Loci or Units
sample_loci_core Sample Loci or Units
sample_LU Sample Loci or Units
sample_units Sample Loci or Units
sample_units_core Sample Loci or Units
setdiff_mod Genetic distance
sort_all Sorting alleles
transcript_GC Transcript GenClone files
zostera Zostera Dataset