An Interface to the GA4GH API

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Documentation for package ‘Rga4gh’ version 0.1.1

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ga4gh_client GA4GH Client
get_bio_sample GET a Bio Sample
get_call_set GET a Call Set
get_dataset GET a Dataset
get_expression_level GET an Expression Level
get_feature GET a Feature
get_feature_set GET a Feature Set
get_ga4gh GET an Object
get_ga4gh.default GET an Object
get_ga4gh.ga4ghClient GET an Object
get_ga4gh.list GET an Object
get_individual GET an Individual
get_read_group GET a Read Group
get_read_group_set GET a Read Group Set
get_reference GET a Reference
get_reference_id GET a Reference
get_reference_set GET a Reference Set
get_rna_quantification GET an RNA Quantification
get_rna_quantification_set GET an RNA Quantification Set
get_variant GET a Variant
get_variant_annotation_set GET a Variant Annotation Set
get_variant_set GET a Variant Set
post_ga4gh POST to a GA4GH Server
search_bio_samples Search for Bio Samples
search_call_sets Search for Call Sets
search_datasets Search for Datasets
search_expression_levels Search for Expression Levels
search_features Search for Features
search_feature_phenotype_associations Search for Feature Phenotype Associations
search_feature_sets Search for Feature Sets
search_ga4gh Search
search_ga4gh.default Search
search_ga4gh.ga4ghClient Search
search_ga4gh.list Search
search_individuals Search for Individuals
search_phenotypes Search for Phenotypes
search_phenotype_association_sets Search for Phenotype Association Sets
search_reads Search for Reads
search_read_group_sets Search for Read Group Sets
search_references Search for References
search_reference_bases Search for Reference Bases
search_reference_sets Search for Reference Sets
search_rna_quantifications Search for RNA Quantifications
search_rna_quantification_sets Search for RNA Quantification Sets
search_variants Search for Variants
search_variant_annotations Search for Variant Annotations
search_variant_annotation_sets Search for Variant Annotation Sets
search_variant_sets Search for Variant Sets