Automated Analysis of 'QuPath' Output Data and Metadata Extraction

Documentation for package ‘drugsens’ version 0.1.0

change_data_format_to_longer	Data format changer
data_binding	Merge all the dataframes coming out from the QuPath
generate_qupath_script	Generate the groovy script used for the analysis
get_QC_plots	Plot some QC plots to define that everything ran correctly
get_QC_plots_parsed_merged_data	Plot QC plots and calculate statistics for bound data
make_count_dataframe	Count the main marker expression
make_run_config	Generates and use a config txt file
string_parsing	Parse image filenames to extract metadata