Classes and Methods for Working with Spectral Data with
Space-Time Attributes
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Documentation for package ‘geoSpectral’ version 0.17.5
Help Pages
-- A --
| Arith-method | Apply arithmetic operations on and between 'Spectra' objects. |
| as,Spectra | Conversion between 'Spectra' and data.frame objects |
-- D --
| dim-method | Dimensions of a 'Spectra' object. |
-- G --
| geoSpectral | Classes and Methods for Working with Spectral Data with Space-Time Attributes |
-- H --
| head-method | Return the first or last part of a 'Spectra' object |
-- M --
| Math-method | Apply arithmetic operations on and between 'Spectra' objects. |
-- N --
| names-method | names of 'SpcList' object |
| names-method | The Names of a 'Spectra' object |
| ncol-method | The Number of Columns of a Spectra object |
| nrow-method | The Number of rows of a 'Spectra' object |
-- R --
| rep-method | Replicate rows of 'Spectra' object |
-- S --
| show-method | Show a SpcHeader object |
| show-method | Show a 'SpcList' object |
| show-method | Show a 'Spectra' object |
| sort-method | Sort a SpcList object |
| sort-method | Sort a Spectra object |
| spc.bbox2lines | Constructs a rectangle with a 'Spectra' object |
| spc.bbox2lines-method | Constructs a rectangle with a 'Spectra' object |
| spc.cname.construct | Generating column names for a 'Spectra' object |
| spc.cname.construct-method | Generating column names for a 'Spectra' object |
| spc.colMeans | Computes the mean along the rows of a 'Spectra' object |
| spc.colMeans-method | Computes the mean along the rows of a 'Spectra' object |
| spc.colnames | Column names of 'Spectra' object |
| spc.colnames-method | Column names of 'Spectra' object |
| spc.colnames<- | Column names of 'Spectra' object |
| spc.colnames<--method | Column names of 'Spectra' object |
| spc.data2header | Populate fields of header slot using data from data slot |
| spc.data2header-method | Populate fields of header slot using data from data slot |
| spc.data2header-method | Populate fields of header slot using data from data slot |
| spc.example_spectra | Create example of Spectral object |
| spc.export.text | Exporting into text format |
| spc.export.text-method | Exporting into text format |
| spc.export.xlsx | Exports a 'Spectra' object into Excel format. |
| spc.export.xlsx-method | Exports a 'Spectra' object into Excel format. |
| spc.getheader | Extract a field of the @header slot of a 'Spectra' object |
| spc.getheader-method | Extract a field of the @header slot of a 'SpcList' object |
| spc.getheader-method | Extract a field of the @header slot of a 'Spectra' object |
| spc.getinvalid.idx | Get index of 'Spectra' rows marked as invalid |
| spc.getinvalid.idx-method | Get index of 'Spectra' rows marked as invalid |
| spc.getselected.idx | Extract index inside of a 'Spectra' object |
| spc.getselected.idx-method | Extract index inside of a 'Spectra' object |
| spc.getwavelengths | Extract wave lenghts of a 'Spectra' object |
| spc.getwavelengths-method | Extract wave lenghts of a 'Spectra' object |
| spc.header.infos | Getting as input the 'Spectra' heade |
| spc.header2data | Copy header data into the @data slot |
| spc.header2data-method | Copy header data into the @data slot |
| spc.import.text | Exporting into text format |
| spc.interp.spectral | Interpolate spectral values |
| spc.interp.spectral-method | Interpolate spectral values |
| spc.invalid.detect | Determinate invalid rows of a 'Spectra' object |
| spc.invalid.detect-method | Determinate invalid rows of a 'Spectra' object |
| spc.lapply | Apply a function over a Spclist |
| spc.lapply-method | Apply a function over a Spclist |
| spc.lines | Add spectra to an existing plot |
| spc.lines-method | Add spectra to an existing plot |
| spc.make.stindex | Create a spatio-temporal index based on a list of 'Spectra' objects |
| spc.makeSpcList | Conversion from 'Spectra' to 'Spclist' |
| spc.plot | Plotting 'Spectra' object |
| spc.plot-method | Plotting 'Spectra' object |
| spc.plot.depth | Plotting 'Spectra' object |
| spc.plot.depth-method | Plotting 'Spectra' object |
| spc.plot.depth.overlay | Plotting 'SpcList' object |
| spc.plot.depth.overlay-method | Plotting 'SpcList' object |
| spc.plot.depth.plotly | Display a Spectra object |
| spc.plot.depth.plotly-method | Display a Spectra object |
| spc.plot.grid | Plotting 'SpcList' object in a grid |
| spc.plot.grid-method | Plotting 'SpcList' object in a grid |
| spc.plot.map.leaflet | Display a Spectra object |
| spc.plot.map.leaflet-method | Display a Spectra object |
| spc.plot.map.plotly | Display a Spectra object |
| spc.plot.map.plotly-method | Display a Spectra object |
| spc.plot.map.rbokeh | Display a Spectra object |
| spc.plot.map.rbokeh-method | Display a Spectra object |
| spc.plot.overlay | Plotting multiple 'Spectra' objects inside a 'SpcList' |
| spc.plot.overlay-method | Plotting multiple 'Spectra' objects inside a 'SpcList' |
| spc.plot.plotly | Plot a Spectra object data |
| spc.plot.plotly-method | Plot a Spectra object data |
| spc.plot.time | Plotting 'Spectra' object |
| spc.plot.time-method | Plotting 'Spectra' object |
| spc.plot.time.plotly | Plot a Spectra object data with respect to time |
| spc.plot.time.plotly-method | Plot a Spectra object data with respect to time |
| spc.rbind | Combine 'Spectra' Objects by Rows |
| spc.rbind-method | Combine 'STIDF' objects by Rows |
| spc.rbind-method | Combine 'Spectra' Objects by Rows |
| spc.Read_ASD | Read the ASD Spectra from text file |
| spc.Read_NOMAD_v2 | Read the NOMAD v2 bio-optical database |
| spc.select | Selecting rows of a 'Spectra' object with the mouse |
| spc.select-method | Selecting rows of a 'Spectra' object with the mouse |
| spc.setheader<- | Set a field of the @header slot of a 'Spectra' object |
| spc.setheader<--method | Set a field of the @header slot of a 'SpcList' object |
| spc.setheader<--method | Set a field of the @header slot of a 'Spectra' object |
| spc.setinvalid.idx<- | Set rows of 'Spectra' as invalid |
| spc.setinvalid.idx<--method | Set rows of 'Spectra' as invalid |
| spc.setselected.idx<- | Set index to a 'Spectra' object |
| spc.setselected.idx<--method | Set index to a 'Spectra' object |
| spc.setwavelengths<- | Setting wavelengths in a 'Spectra' object |
| spc.setwavelengths<--method | Setting wavelengths in a 'Spectra' object |
| spc.STI.stdistance | Report the space and time distance of each row of an STI-inherited object |
| spc.timeMatch | Match two time sequences |
| spc.updateheader | Update a field of the @header slot of a 'Spectra' object |
| spc.updateheader-method | Update a field of the @header slot of a 'Spectra' object |
| SpcHeader-class | 'SpcHeader' class for header object storing metadata. |
| SpcHeaderAdd | Set a field of the @header slot of a 'SpcHeader' class object |
| SpcHeaderAdd-method | Set a field of the @header slot of a 'SpcHeader' class object |
| SpcHeaderList-class | 'SpcHeaderList' class. |
| SpcList | Constructor function for the 'SpcList' class. |
| SpcList-class | SpcList class definition |
| Spectra | Constructor function for the class 'Spectra'. |
| Spectra-class | Spectra class definition |
| Spectra-coerce | Conversion between 'Spectra' and data.frame objects |
| subset-method | Subsetting for a 'spcList' and Spectra classes |
| subset-method | Subsetting for a 'Spectra' and spcList classes |
-- misc --
| $,Spectra | Extract or replace parts of a 'Spectra' object |
| $-method | Extract or replace parts of a 'Spectra' object |
| $-method | Extract or replace parts of a 'SpcList' object |
| $<-,Spectra | Extract or replace parts of a 'Spectra' object |
| $<--method | Extract or replace parts of a 'Spectra' object |
| [-method | Extract or replace parts of a 'Spectra' object |
| [[-method | Extract or replace parts of a 'Spectra' object |
| [[<--method | Extract or replace parts of a 'Spectra' object |