An R Interface to Open-Access Malaria Data, Hosted by the 'Malaria Atlas Project'


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Documentation for package ‘malariaAtlas’ version 1.0.1

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as.MAPraster Convert Raster objects into MAPraster objects
as.MAPshp Convert SpatialPolygon objects into MAPshp objects
as.pr.points Convert data.frames to pr.points objects.
as.vectorpoints Convert data.frames to vector.points objects.
autoplot.MAPraster Quickly visualise Rasters downloaded from MAP
autoplot.MAPshp Create a basic plot to visualise downloaded shapefiles
autoplot.pr.points Create a basic plot showing locations of downloaded PR points
autoplot.vector.points Create a basic plot showing locations of downloaded Vector points
autoplot_MAPraster Quickly visualise Rasters downloaded from MAP
convertPrevalence convert prevalences from one age range to another
extractRaster Extract pixel values from MAP rasters using point coordinates.
fillDHSCoordinates Add DHS locations to malaria data
getPR Download PR points from the MAP database
getRaster Download Rasters produced by the Malaria Atlas Project
getShp Download MAPadmin2013 Administrative Boundary Shapefiles from the MAP geoserver
getVecOcc Download Vector Occurrence points from the MAP database 'getVecOcc' downloads all publicly available vector occurrence points for a specified country (or countries) and returns this as a dataframe. 'country' and 'ISO' refer to countries and a lower-level administrative regions such as French Guiana.
isAvailable Available data to download from the MAP geoserver.
isAvailable_pr Check whether PR points are available for a given location
isAvailable_vec Check whether Vector Occurrence points are available for a given location
listData List data available to download from the MAP geoserver.
listPoints List countries with available MAP Point data.
listRaster List all MAP Rasters available to download.
listShp List administrative units for which shapefiles are stored on the MAP geoserver.
listSpecies list all species which have occurrence data within the MAP database.
malariaAtlas An R interface to open-access malaria data, hosted by the Malaria Atlas Project.