Microbiota STability ASsessment via Iterative cluStering

Documentation for package ‘microSTASIS’ version 0.1.0

clr	Detected ASV from multiple individuals at four different sampling times.
CV_iterative_clustering	Cross validation of the iterative Hartigan-Wong k-means clustering.
CV_results	Compute the error or plot the stability values after 'CV_iterative_clustering()'.
iterative_clustering	Iterative Hartigan-Wong k-means clustering.
metadata_groups	Easily extract groups of individuals from metadata variables.
paired_times	Generate a subset matrix with paired times.
pre_radarPC	Compute the PCA to the 'paired_times()' output previously to visualize radar charts of principal components.
radarPC	Plot a radar chart of paired samples from one individual or from different groups.
stabilitas	Extract the stability results of individuals from the output of 'iterative_clustering()'.
st_evolution	Generate boxplots of the stability evolution throughout sampling times by groups
st_heatmap	Plot a heatmap of the stability results
st_previz	Process the 'stabilitas()' output to a new format ready for the visualization functions.
st_scatter	Plot a scatter and side boxplot of the stability results