Algebraic and Statistical Functions for Genetics
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘miraculix’ version 0.9.23
Help Pages
| miraculix-package | MIRACULIX |
| allele_freq | Fast calculation of the Genomic Relationship Matrix and its derivatives |
| as.genomicmatrix | Transform a Matrix to a Compressed Matrix |
| as.haplomatrix | Transform a Haplotype Vector to a Compressed Haplotype Vector |
| as.matrix.genomicmatrix | Class 'genomicmatrix' |
| as.matrix.haplomatrix | Class 'haplomatrix' |
| AutoCoding | Setting control arguments |
| codeOrigins | Functions designed for the R package 'MoBPS' |
| compute | Functions designed for the R package 'MoBPS' |
| computeSNPS | Functions designed for the R package 'MoBPS' |
| copyGeno | Manipulating Compressed Matrices |
| crossprodx | Fast calculation of the Genomic Relationship Matrix and its derivatives |
| C_matrixvector012 | multiplication from left of 012 vector with a matrix |
| C_vector012matrix | multiplication from left of 012 vector with a matrix |
| decodeOrigins | Functions designed for the R package 'MoBPS' |
| fillGeno | Manipulating Compressed Matrices |
| FirstGenuineMethod | Setting control arguments |
| FirstMoBPSmethod | Setting control arguments |
| genomicmatrix | Transform a Matrix to a Compressed Matrix |
| genomicmatrix-class | Class 'genomicmatrix' |
| genoVector | Multiplication of a vector to a compressed SNP matrix |
| Hamming2 | Setting control arguments |
| Hamming3 | Setting control arguments |
| haplomatrix | Transform a Haplotype Vector to a Compressed Haplotype Vector |
| haplomatrix-class | Class 'haplomatrix' |
| has.instruction.set | CPU instruction set |
| LastGenuineMethod | Setting control arguments |
| LastMoBPSmethod | Setting control arguments |
| matrixvector012 | multiplication from left of 012 vector with a matrix |
| miraculix | MIRACULIX |
| MoBPS | Functions designed for the R package 'MoBPS' |
| Multiply | Setting control arguments |
| Multiply256 | Setting control arguments |
| NoSNPcoding | Setting control arguments |
| NoSNPcodingAVX | Setting control arguments |
| NoSNPcodingR | Setting control arguments |
| Packed | Setting control arguments |
| Packed256 | Setting control arguments |
| plot.scan.statistics | Scan Statistics |
| plot.scanning | Scan Statistics |
| print.genomicmatrix | Class 'genomicmatrix' |
| print.haplomatrix | Class 'haplomatrix' |
| print.scan.statistics | Scan Statistics |
| print.scanning | Scan Statistics |
| relationshipMatrix | Fast calculation of the Genomic Relationship Matrix and its derivatives |
| RFoptions | Setting control arguments |
| rhaplo | Generation of Random Haplotype Matrix |
| scan | Scan Statistics |
| scan.statistics | Scan Statistics |
| scanning | Scan Statistics |
| Shuffle | Setting control arguments |
| Shuffle256 | Setting control arguments |
| SNPCODING_NAMES | Setting control arguments |
| SNPeffect | Fast calculation of the Genomic Relationship Matrix and its derivatives |
| solveRelMat | Fast calculation of the Genomic Relationship Matrix and its derivatives |
| str.genomicmatrix | Class 'genomicmatrix' |
| str.haplomatrix | Class 'haplomatrix' |
| summary.scan.statistics | Scan Statistics |
| summary.scanning | Scan Statistics |
| ThreeBit | Setting control arguments |
| TwoBit | Setting control arguments |
| vector012matrix | multiplication from left of 012 vector with a matrix |
| vectorGeno | Multiplication of a vector to a compressed SNP matrix |
| vwm | Fast calculation of the Genomic Relationship Matrix and its derivatives |
| windower | Windower |
| windower.sd | Windower |
| windower.var | Windower |
| zeroNthGeno | Manipulating Compressed Matrices |