Manipulating 'Freesurfer' Generated Data


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Documentation for package ‘rsurfer’ version 0.2

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rsurfer-package RSurfer
addrandomdiagnosis Add Random Diagnosis
addrandomgender Add Random Gender
adni.mergewithfreesurferoutput ADNI Merge With 'Freesurfer' Output
adni.printfilelocations ADNI Print File Locations
adni.setfiles ADNI Set Files
caddementia.mergewithfreesurferoutput CAD Dementia Merge With 'Freesurfer' Output
caddementia.printfilelocations CAD Dementia Print File Locations
caddementia.setfiles CAD Dementia Set Files
eliminateabnormalities Eliminate Abnormal Rows and Columns
eliminateabnormalities.cols Eliminate Abnormal Columns
eliminateabnormalities.rows Eliminate Abnormal Rows
export.forKNIME Export Data For KNIME
extract.brain.features Extract All MRI Brain Features
extract.byname Extract Features By Group Name
extract.cortical Extract Cortical Fields
extract.corticalsurfaceareas Extract Cortical Surface Areas
extract.corticalthicknesses Extract Cortical Thicknesses
extract.corticalthicknessstddevs Extract Cortical Thickness Standard Deviations
extract.corticalvolumes Extract Cortical Volumes
extract.hippocampalvolumes Extract Hippocampal Volumes
extract.subcorticalvolumes Extract Subcortical Volumes
extract.volumes Extract Cortical Thicknesses
fsdirectorycheck 'Freesurfer' Subject Directory Check
fsimport 'Freesurfer' Import (Serialise)
fsimport.listfields 'Freesurfer' Import (List Fields)
fsimport.serialise 'Freesurfer' Import (Serialise)
generaterandomsubjects Generate Random Subjects
get.hemisphere.side Get Hemisphere Side
get.opposite.hemisphere.measurement Get Opposite Hemisphere Measurement
getfieldgroup Get Field Group of Feature
getfshome Get 'Freesurfer' Home
getfsversion Get 'Freesurfer' Version
getnamesofareas Get Names of Areas
getnamesofthicknesses Get Names of Thicknesses
getnamesofvolumes Get Names of Volumes
is.cortical Is Feature Cortical
is.corticalarea Is Feature Cortical Area
is.corticalthickness Is Feature Cortical Thickness
is.corticalthicknessstd Is Feature Cortical Thickness Standard Deviation
is.corticalvolume Is Feature Cortical Volume
is.hippocampalvolume Is Feature Hippocampal Volume
is.subcorticalvolume Is Feature Subcortical Volume
isfsfeature Is Feature Created by 'Freesurfer'
ixi.mergewithfreesurferoutput 'IXI' Merge Study Information With 'Freesurfer' Output
ixi.setfile IXI Set File
normalise Normalise
normalise.listfieldgroups List Normalisation Field Groups
normalise.listmethods List Normalisation Methods
removeabnormalrowsandcols Remove Abnormalities
rsurfer RSurfer
searchforabnormalities.cols Search For Abnormalities (Columns)
searchforabnormalities.rows Search For Abnormalities (Rows)
setfshome Set 'Freesurfer' Home
subjectDistributionTable Create Subject Distribution Table
subjectDistributionTableToLatex Convert Subject Distribution Table To LaTeX
test.fieldextraction Test Field Extraction
test.importing Test Importing
test.normalisation Test Normalisation