Synthetic RNA-Seq Network Generation and Mutual Information
Estimates
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Documentation for package ‘synRNASeqNet’ version 1.0
Help Pages
| synRNASeqNet-package | Synthetic RNA-Seq Network Generation and Mutual Information Estimates |
| aucDisc | Calculate Area Under a (ROC/PR) Curve |
| DiscriminantPower | Discriminant Power |
| entropyBayes | Bayesian Entropy Estimate |
| entropyCS | Chao-Shen Entropy Estimate |
| entropyML | Maximum Likelihood Entropy Estimate |
| entropyMM | Miller-Madow corrected Entropy Estimate |
| entropyShrink | James-Stein Shrinkage Entropy Estimate |
| Likelihoods | Likelihood Indices |
| mainNetFunction | Main Estimation and Evaluation Function |
| parEntropyEstimate | Parallel Entropy Estimation |
| parMIEstimate | Parallel Mutual Information Estimation |
| parMIKD | Parallel Kernel Density Mutual Information Estimate |
| performanceIndex | Evalutate Performance Indices |
| performanceNET | Evalutate Performance Indices |
| plotPR | Plot PR Curve |
| plotROC | Plot ROC Curve |
| simulatedData | Random Generation Networks for RNA-Seq Data |
| synRNASeqNet | Synthetic RNA-Seq Network Generation and Mutual Information Estimates |
| YoudenIndex | Youden's Index |