Tree Structured Hidden Markov Model

Documentation for package ‘treeHMM’ version 0.1.1

backward	Infer the backward probabilities for all the nodes of the treeHMM
baumWelch	Inferring the parameters of a tree Hidden Markov Model via the Baum-Welch algorithm
baumWelchRecursion	Implementation of the Baum Welch Algorithm as a special case of EM algorithm
bwd_seq_gen	Calculate the order in which nodes in the tree should be traversed during the backward pass(leaves to roots)
forward	Infer the forward probabilities for all the nodes of the treeHMM
fwd_seq_gen	Calculate the order in which nodes in the tree should be traversed during the forward pass(roots to leaves)
initHMM	Initializing treeHMM with given parameters
noisy_or	Calculating the probability of transition from multiple nodes to given node in the tree