Bio.RNAlienLibrary
createSessionID
logMessage
logEither
modelConstructer
constructTaxonomyRecordsCSVTable
resultSummary
setVerbose
logToolVersions
checkTools
systemCMsearch
readCMSearch
readCMSearches
compareCM
parseCMSearch
cmSearchsubString
setInitialTaxId
evaluateConstructionResult
readCMstat
parseCMstat
checkNCBIConnection
preprocessClustalForRNAz
preprocessClustalForRNAzExternal
preprocessClustalForRNAcodeExternal
rnaZEvalOutput
reformatFasta
checkTaxonomyRestriction
evaluePartitionTrimCMsearchHits