Bio.RNAlienLibrary

createSessionID

logMessage

logEither

modelConstructer

constructTaxonomyRecordsCSVTable

resultSummary

setVerbose

logToolVersions

checkTools

systemCMsearch

readCMSearch

readCMSearches

compareCM

parseCMSearch

cmSearchsubString

setInitialTaxId

evaluateConstructionResult

readCMstat

parseCMstat

checkNCBIConnection

preprocessClustalForRNAz

preprocessClustalForRNAzExternal

preprocessClustalForRNAcodeExternal

rnaZEvalOutput

reformatFasta

checkTaxonomyRestriction

evaluePartitionTrimCMsearchHits