KEYWORD
(SHORT) |
KEYWORD
(LONG) |
DESCRIPTION |
OFF | OFF |
Return to the main drawing mode (draw atomic coordinates).
Instead using this command, you can hit the ESCAPE key. |
HYD | HYDROPHOBICITY | Draw averaged hydrophobicity. |
WEI | WEIGHTED | Draw weighted hydrophobicity. |
MOM | MOMENT | Draw hydrophobic moment. |
SID | SIDED | Draw sided hydrophobicity for both sides (two lines). |
F1 | F1 | Draw hydrophobicity function F1 (hyphob_function1.c). |
F2 | F2 | Draw hydrophobicity function F2 (hyphob_function2.c). |
F3 | F3 | Draw hydrophobicity function F3 (hyphob_function3.c). |
F4 | F4 | Draw hydrophobicity function F4 (hyphob_function4.c). |
F5 | F5 | Draw hydrophobicity function F5 (hyphob_function5.c). |
F6 | F6 | Draw hydrophobicity function F6 (hyphob_function6.c). |
F7 | F7 | Draw hydrophobicity function F7 (hyphob_function7.c). |
PARAMETER
(SHORT) |
DESCRIPTION |
start_index |
The actual number of the first residue.
Note that serial numbers are not used! |
end_index | The actual number of the last residue. |
COMMAND | DESCRIPTION |
load 2por.pdb
seq from 1 scale eis win 7 angle 180 plot hyd mom 1-300 |
Load porin coordinates, copy sequence to
the main sequence buffer, select Eisenberg hydrophobicity scale, set window width to 7 and set angle to 180 degrees. Draw averaged hydrophobicity and hydrophobic moment for residues from 1 to 300. |
seq load sample.fasta
scale eis angle 100 plot mom |
Read the file sample.fasta, which contains
the protein sequence in FASTA format (one letter code), select Eisenberg scale, set angle to 100 and draw hydrophobic moment. |
plot off |
Return to default drawing mode.
Instead using this command, you can hit the ESCAPE key. |