Package org.ujmp.core.genericmatrix.impl
Class DefaultSparseGenericMatrix<A>
java.lang.Object
java.lang.Number
org.ujmp.core.AbstractMatrix
org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix<A>
org.ujmp.core.genericmatrix.stub.AbstractSparseGenericMatrix<A>
org.ujmp.core.genericmatrix.impl.DefaultSparseGenericMatrix<A>
- All Implemented Interfaces:
Serializable
,Cloneable
,Comparable<Matrix>
,HasMetaData
,BaseMatrix
,BooleanCalculations
,CanPerformCalculations
,DenseMatrix
,DenseMatrix2D
,DenseMatrixMultiD
,BasicDoubleCalculations
,DoubleCalculations
,BasicEntrywiseDoubleCalculations
,CreatorDoubleCalculations
,EntrywiseDoubleCalculations
,HyperbolicDoubleCalculations
,MiscEntrywiseDoubleCalculations
,RoundingDoubleCalculations
,TrigonometricDoubleCalculations
,DecompositionDoubleCalculations
,DiscretizeCalculations
,GeneralDoubleCalculations
,MiscGeneralDoubleCalculations
,MissingValueDoubleCalculations
,StatisticalDoubleCalculations
,BaseGenericMatrix<A>
,DenseGenericMatrix<A>
,DenseGenericMatrix2D<A>
,DenseGenericMatrixMultiD<A>
,GenericMatrix<A>
,GenericMatrix2D<A>
,GenericMatrixMultiD<A>
,SparseGenericMatrix<A>
,SparseGenericMatrix2D<A>
,SparseGenericMatrixMultiD<A>
,BaseMatrixProperties
,Clearable
,Conversions
,CoordinateFunctions
,CoreObject
,DistanceMeasures
,ExtendedMatrixProperties
,GettersAndSetters
,HasDescription
,HasGUIObject
,HasId
,HasLabel
,IntCalculations
,Matrix
,Matrix2D
,MatrixMultiD
,ObjectCalculations
,SparseMatrix
,SparseMatrix2D
,SparseMatrixMultiD
,StringCalculations
- Direct Known Subclasses:
DefaultSparseBigDecimalMatrix
,DefaultSparseBigIntegerMatrix
,DefaultSparseBooleanMatrix
,DefaultSparseByteMatrix
,DefaultSparseCharMatrix
,DefaultSparseDoubleMatrix
,DefaultSparseFloatMatrix
,DefaultSparseIntMatrix
,DefaultSparseLongMatrix
,DefaultSparseObjectMatrix
,DefaultSparseShortMatrix
,DefaultSparseStringMatrix
- See Also:
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Field Summary
FieldsModifier and TypeFieldDescriptionprivate int
private static final long
protected final Map<Coordinates,
A> Fields inherited from class org.ujmp.core.AbstractMatrix
guiObject, size
Fields inherited from interface org.ujmp.core.BaseMatrix
ALL, COLUMN, LINK, NEW, NONE, ORIG, ROW, X, Y, Z
Fields inherited from interface org.ujmp.core.DenseMatrix
Factory
Fields inherited from interface org.ujmp.core.DenseMatrix2D
Factory
Fields inherited from interface org.ujmp.core.interfaces.HasDescription
DESCRIPTION
Fields inherited from interface org.ujmp.core.annotation.HasMetaData
DIMENSIONMETADATA
Fields inherited from interface org.ujmp.core.Matrix
chol, divideMatrix, divideScalar, eig, Factory, inv, lu, minusMatrix, minusScalar, mtimes, plusMatrix, plusScalar, qr, solve, svd, timesMatrix, timesScalar, transpose
Fields inherited from interface org.ujmp.core.SparseMatrix
Factory
Fields inherited from interface org.ujmp.core.SparseMatrix2D
Factory
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Constructor Summary
ConstructorsConstructorDescriptionDefaultSparseGenericMatrix
(long... size) DefaultSparseGenericMatrix
(Matrix m, int maximumNumberOfEntries) -
Method Summary
Modifier and TypeMethodDescriptionIterable<long[]>
Returns an Iterator that only goes over the coordinates in the Matrix that are stored.final void
clear()
boolean
containsCoordinates
(long... coordinates) Determines if the given Coordinates are part of the Matrix.double
getAsDouble
(long... coordinates) Returns a double representation of an entry in the matrix.getObject
(long... coordinates) long
void
setAsDouble
(double value, long... coordinates) Sets an entry in the matrix to a double value.void
void
setSize
(long... size) Sets the size of the matrix.Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractSparseGenericMatrix
isSparse
Methods inherited from class org.ujmp.core.genericmatrix.stub.AbstractGenericMatrix
getAsObject, getObject, getObject, setAsObject, setObject, setObject
Methods inherited from class org.ujmp.core.AbstractMatrix
abs, addMissing, allCoordinates, allValues, and, and, append, appendHorizontally, appendVertically, atimes, bigDecimalValue, bigIntegerValue, booleanValue, bootstrap, bootstrap, ceil, center, charValue, chebyshevDistanceTo, chol, clone, compareTo, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, convert, convertEncoding, corrcoef, cos, cosh, cosineSimilarity, cosineSimilarityTo, countMissing, cov, cumprod, cumsum, dateValue, delete, delete, delete, deleteColumns, deleteColumns, deleteColumnsWithMissingValues, deleteRows, deleteRows, deleteRowsWithMissingValues, det, diag, diff, discretize, discretize, discretizeToBoolean, discretizeToColumns, divide, divide, divide, divide, doubleValue, eig, eigSymm, eq, eq, equals, equalsAnnotation, equalsContent, euklideanDistance, euklideanDistanceTo, exp, exportTo, extractAnnotation, eye, fadeIn, fadeOut, fill, fireValueChanged, fireValueChanged, fireValueChanged, flipdim, floatValue, floor, ge, ge, getAbsoluteValueMean, getAbsoluteValueSum, getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsByteArray, getAsChar, getAsDate, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsShort, getAsString, getColumnCount, getColumnForLabel, getColumnLabel, getColumnList, getCoordinatesOfMaximum, getCoordinatesOfMinimum, getCoreObjectId, getDescription, getDimensionCount, getDimensionLabel, getDimensionMetaData, getEuklideanValue, getFactory, getGUIObject, getId, getLabel, getLabelObject, getMaxValue, getMeanValue, getMetaData, getMetaData, getMetaDataDimensionMatrix, getMetaDataDouble, getMetaDataMatrix, getMetaDataString, getMinValue, getPositionForLabel, getPreferredObject, getRMS, getRowCount, getRowForLabel, getRowLabel, getRowList, getSize, getSize, getStdValue, getValueSum, getZCount, ginv, grayScale, gt, gt, importFrom, impute, includeAnnotation, indexOfMax, indexOfMin, intValue, inv, invSPD, invSymm, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSPD, isSquare, isSymmetric, isTransient, le, le, log, log10, log2, logistic, longValue, lowerCase, lt, lt, lu, manhattenDistance, manhattenDistanceTo, max, mean, min, minkowskiDistance, minkowskiDistanceTo, minus, minus, minus, minus, mtimes, mtimes, mutualInf, nans, ne, ne, nonZeroCoordinates, norm1, norm2, normalize, normF, normInf, not, ones, or, or, pairedTTest, pdet, pinv, pinv, plus, plus, plus, plus, power, power, princomp, prod, qr, rand, randn, rank, removePunctuation, removeWords, replace, replaceMissingBy, replaceRegex, replaceRegex, reshape, round, save, save, select, select, select, selectColumns, selectColumns, selectedCoordinates, selectedCoordinates, selectRows, selectRows, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsByteArray, setAsChar, setAsDate, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsShort, setAsString, setColumnLabel, setContent, setDescription, setDimensionLabel, setDimensionMetaData, setId, setLabel, setMetaData, setMetaData, setMetaDataDimensionMatrix, setRowLabel, share, share, showGUI, shuffle, sign, sin, sinh, solve, solveSPD, solveSymm, sortrows, sqrt, squeeze, standardize, std, stem, stringValue, subMatrix, sum, svd, svd, swap, tan, tanh, tanh, tfIdf, times, times, times, times, toBigDecimalArray, toBigDecimalMatrix, toBigIntegerArray, toBigIntegerMatrix, toBooleanArray, toBooleanMatrix, toByteArray, toByteMatrix, toCharArray, toCharMatrix, toColumnVector, toDateArray, toDoubleArray, toDoubleMatrix, toFloatArray, toFloatMatrix, toHtml, toIntArray, toIntMatrix, toListMatrix, toLongArray, toLongMatrix, toMapMatrix, toObjectArray, toObjectMatrix, toRowVector, toSetMatrix, toShortArray, toShortMatrix, toString, toStringArray, toStringMatrix, trace, translate, transpose, transpose, transpose, tril, triu, unique, uniqueValueCount, upperCase, var, xor, xor, zeros
Methods inherited from class java.lang.Number
byteValue, shortValue
Methods inherited from class java.lang.Object
finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
Methods inherited from interface org.ujmp.core.BaseMatrix
getFactory
Methods inherited from interface org.ujmp.core.interfaces.BaseMatrixProperties
allValues, equals, equalsAnnotation, equalsContent, getColumnCount, getColumnList, getDimensionCount, getRowCount, getRowList, getSize, getSize, getZCount, isColumnVector, isDiagonal, isEmpty, isMultidimensionalMatrix, isReadOnly, isResizable, isRowVector, isScalar, isSingular, isSquare, isSymmetric, isTransient, toString
Methods inherited from interface org.ujmp.core.doublematrix.calculation.basic.BasicDoubleCalculations
atimes, divide, divide, divide, divide, minus, minus, minus, minus, mtimes, mtimes, plus, plus, plus, plus, times, times, times, times
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.basic.BasicEntrywiseDoubleCalculations
abs, exp, log, log10, log2, logistic, power, power, sign, sqrt
Methods inherited from interface org.ujmp.core.booleanmatrix.calculation.BooleanCalculations
and, and, eq, eq, ge, ge, gt, gt, le, le, lt, lt, ne, ne, not, or, or, xor, xor
Methods inherited from interface java.lang.Comparable
compareTo
Methods inherited from interface org.ujmp.core.interfaces.Conversions
toBigDecimalMatrix, toBigIntegerMatrix, toBooleanMatrix, toByteMatrix, toCharMatrix, toDoubleMatrix, toFloatMatrix, toIntMatrix, toListMatrix, toLongMatrix, toMapMatrix, toObjectMatrix, toSetMatrix, toShortMatrix, toStringMatrix
Methods inherited from interface org.ujmp.core.interfaces.CoordinateFunctions
allCoordinates, getCoordinatesOfMaximum, getCoordinatesOfMinimum, nonZeroCoordinates, selectedCoordinates, selectedCoordinates
Methods inherited from interface org.ujmp.core.interfaces.CoreObject
getCoreObjectId
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.creators.CreatorDoubleCalculations
eye, nans, ones, rand, randn, zeros
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.decomposition.DecompositionDoubleCalculations
chol, eig, eigSymm, ginv, inv, invSPD, invSymm, lu, pinv, pinv, princomp, qr, solve, solveSPD, solveSymm, svd, svd
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.discretize.DiscretizeCalculations
discretize, discretize, discretizeToBoolean, discretizeToColumns
Methods inherited from interface org.ujmp.core.interfaces.DistanceMeasures
chebyshevDistanceTo, cosineSimilarity, cosineSimilarityTo, euklideanDistance, euklideanDistanceTo, manhattenDistance, manhattenDistanceTo, minkowskiDistance, minkowskiDistanceTo
Methods inherited from interface org.ujmp.core.interfaces.ExtendedMatrixProperties
bigDecimalValue, bigIntegerValue, booleanValue, byteValue, charValue, containsBigDecimal, containsBigInteger, containsBoolean, containsByte, containsChar, containsDate, containsDouble, containsFloat, containsInt, containsLong, containsMissingValues, containsNull, containsObject, containsShort, containsString, dateValue, det, doubleValue, floatValue, getAbsoluteValueMean, getAbsoluteValueSum, getEuklideanValue, getMaxValue, getMeanValue, getMinValue, getRMS, getStdValue, getValueSum, intValue, isSPD, longValue, norm1, norm2, normF, normInf, pdet, rank, setContent, shortValue, stringValue, trace
Methods inherited from interface org.ujmp.core.interfaces.GettersAndSetters
getAsBigDecimal, getAsBigInteger, getAsBoolean, getAsByte, getAsByteArray, getAsChar, getAsDate, getAsFloat, getAsInt, getAsLong, getAsMatrix, getAsObject, getAsShort, getAsString, getPreferredObject, setAsBigDecimal, setAsBigInteger, setAsBoolean, setAsByte, setAsByteArray, setAsChar, setAsDate, setAsFloat, setAsInt, setAsLong, setAsMatrix, setAsObject, setAsShort, setAsString, toBigDecimalArray, toBigIntegerArray, toBooleanArray, toByteArray, toCharArray, toDateArray, toDoubleArray, toFloatArray, toIntArray, toLongArray, toObjectArray, toShortArray, toStringArray
Methods inherited from interface org.ujmp.core.interfaces.HasDescription
getDescription, setDescription
Methods inherited from interface org.ujmp.core.interfaces.HasGUIObject
getGUIObject, showGUI
Methods inherited from interface org.ujmp.core.interfaces.HasLabel
getLabel, getLabelObject, setLabel
Methods inherited from interface org.ujmp.core.annotation.HasMetaData
getColumnForLabel, getColumnLabel, getDimensionLabel, getDimensionMetaData, getMetaData, getMetaData, getMetaDataDimensionMatrix, getMetaDataDouble, getMetaDataMatrix, getMetaDataString, getPositionForLabel, getRowForLabel, getRowLabel, setColumnLabel, setDimensionLabel, setDimensionMetaData, setMetaData, setMetaData, setMetaDataDimensionMatrix, setRowLabel
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.hyperbolic.HyperbolicDoubleCalculations
cosh, sinh, tanh, tanh
Methods inherited from interface org.ujmp.core.Matrix
clone, exportTo, fireValueChanged, fireValueChanged, fireValueChanged, importFrom, save, save, share, share, toHtml
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.misc.MiscEntrywiseDoubleCalculations
grayScale
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.misc.MiscGeneralDoubleCalculations
append, appendHorizontally, appendVertically, center, fadeIn, fadeOut, normalize, replaceMissingBy, standardize
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.missingvalues.MissingValueDoubleCalculations
addMissing, countMissing, deleteColumnsWithMissingValues, deleteRowsWithMissingValues, impute
Methods inherited from interface org.ujmp.core.objectmatrix.calculation.ObjectCalculations
bootstrap, bootstrap, convert, delete, delete, delete, deleteColumns, deleteColumns, deleteRows, deleteRows, diag, extractAnnotation, fill, flipdim, includeAnnotation, replace, reshape, select, select, select, selectColumns, selectColumns, selectRows, selectRows, shuffle, sortrows, squeeze, subMatrix, swap, toColumnVector, toRowVector, transpose, transpose, transpose, tril, triu, unique, uniqueValueCount
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.rounding.RoundingDoubleCalculations
ceil, floor, round
Methods inherited from interface org.ujmp.core.doublematrix.calculation.general.statistical.StatisticalDoubleCalculations
corrcoef, cov, cumprod, cumsum, diff, indexOfMax, indexOfMin, max, mean, min, mutualInf, pairedTTest, prod, std, sum, var
Methods inherited from interface org.ujmp.core.stringmatrix.calculation.StringCalculations
convertEncoding, lowerCase, removePunctuation, removeWords, replaceRegex, replaceRegex, stem, tfIdf, translate, upperCase
Methods inherited from interface org.ujmp.core.doublematrix.calculation.entrywise.trigonometric.TrigonometricDoubleCalculations
cos, sin, tan
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Field Details
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serialVersionUID
private static final long serialVersionUID- See Also:
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values
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maximumNumberOfEntries
private int maximumNumberOfEntries
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Constructor Details
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DefaultSparseGenericMatrix
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DefaultSparseGenericMatrix
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DefaultSparseGenericMatrix
public DefaultSparseGenericMatrix(long... size)
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Method Details
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setSize
public void setSize(long... size) Description copied from interface:BaseMatrixProperties
Sets the size of the matrix. This is an optional method that is not implemented for all matrices. If this method is not implemented, aMatrixException
is thrown.- Specified by:
setSize
in interfaceBaseMatrixProperties
- Overrides:
setSize
in classAbstractMatrix
- Parameters:
size
- the new size of the matrix
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getObject
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getValueCount
public long getValueCount()- Specified by:
getValueCount
in interfaceBaseMatrixProperties
- Overrides:
getValueCount
in classAbstractMatrix
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setObject
- Specified by:
setObject
in interfaceGenericMatrixMultiD<A>
- Overrides:
setObject
in classAbstractGenericMatrix<A>
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availableCoordinates
Description copied from interface:CoordinateFunctions
Returns an Iterator that only goes over the coordinates in the Matrix that are stored. For most Matrices, this is the same as allCoordinates(). For sparse Matrices, it iterates only over the entries in it.- Returns:
- Iterable over the saved entries in a Matrix.
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containsCoordinates
public boolean containsCoordinates(long... coordinates) Description copied from interface:CoordinateFunctions
Determines if the given Coordinates are part of the Matrix. If the Matrix is dense, true is returned for all Coordinates smaller than the Matrix's size. For sparse Matrices, this function checks if the coordinates are actually stored in the matrix or not.- Parameters:
coordinates
- The coordinates to check- Returns:
- a boolean stating if the coordinates are part of the Matrix
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getAsDouble
public double getAsDouble(long... coordinates) Description copied from interface:GettersAndSetters
Returns a double representation of an entry in the matrix. The stored value will be converted to a double as good as possible.- Specified by:
getAsDouble
in interfaceGettersAndSetters
- Overrides:
getAsDouble
in classAbstractMatrix
- Parameters:
coordinates
- location of the entry- Returns:
- a double representation of the entry @
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setAsDouble
public void setAsDouble(double value, long... coordinates) Description copied from interface:GettersAndSetters
Sets an entry in the matrix to a double value. If the matrix cannot store double values, the value will be represented as good as possible.- Specified by:
setAsDouble
in interfaceGettersAndSetters
- Overrides:
setAsDouble
in classAbstractMatrix
- Parameters:
value
- double valuecoordinates
- location of the entry @
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getValueType
- Specified by:
getValueType
in interfaceBaseMatrixProperties
- Overrides:
getValueType
in classAbstractMatrix
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clear
public final void clear()
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