Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models


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Documentation for package ‘DHARMa’ version 0.2.0

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DHARMa-package DHARMa - Residual Diagnostics for HierArchical (Multi-level / Mixed) Regression Models
createData Simulate test data
createDHARMa Convert simulated residuals or posterior predictive simulations to a DHARMa object
DHARMa DHARMa - Residual Diagnostics for HierArchical (Multi-level / Mixed) Regression Models
fitted.gam This function overwrites the standard fitted function for GAM
getRandomState Record and restore a random state
plot.DHARMa DHARMa standard residual plots
plotConventionalResiduals Conventional residual plot
plotQQunif Quantile-quantile plot for a uniform distribution
plotResiduals Generic residual plot with either spline or quantile regression
plotSimulatedResiduals DHARMa standard residual plots
print.DHARMa Print simulated residuals
recalculateResiduals Recalculate residuals with grouping
refit.glmmTMB Refit a Model with a Different Response
refit.lm Refit a Model with a Different Response
residuals.DHARMa Return residuals of a DHARMa simulation
runBenchmarks Benchmark calculations
simulateResiduals Create simulated residuals
testDispersion DHARMa dispersion tests
testGeneric Generic simulation test of a summary statistic
testOverdispersion Simulated overdisperstion tests
testOverdispersionParametric Parametric overdisperstion tests
testPDistribution Plot distribution of p-values
testResiduals DHARMa general residual test
testSimulatedResiduals Residual tests
testSpatialAutocorrelation Test for spatial autocorrelation
testTemporalAutocorrelation Test for temporal autocorrelation
testUniformity Test for overall uniformity
testZeroInflation Tests for zero-inflation