ac_coeffs(size_t ncols, ubmatrix &ac_coeffs) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlinevirtual |
ac_lengths(size_t ncols, ubmatrix &ac_coeffs_cols, ubvector &ac_lengths) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlinevirtual |
add_line(const vec_t &pars, double log_weight, size_t walker_ix, int func_ret, bool mcmc_accept, data_t &dat, size_t i_thread, fill_t &fill) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlinevirtual |
aff_inv | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
ai_initial_step | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
allow_estimates | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | |
always_accept | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
best_point(vec_t &best, double w_best, data_t &dat) | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | inlineprotectedvirtual |
cl_args | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | |
col_names | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
col_units | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
curr_walker | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
current | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
data_arr | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
err_nonconv | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
esti | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
file_header(o2scl_hdf::hdf_file &hf) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | inlineprotectedvirtual |
file_update_iters | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | |
file_update_time | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | |
fill_line(const vec_t &pars, double log_weight, std::vector< double > &line, data_t &dat, size_t i_walker, fill_t &fill) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlineprotectedvirtual |
first_write | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
get_chain_sizes(std::vector< size_t > &chain_sizes) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inline |
get_table() | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inline |
high_copy | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
initial_points | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
initial_points_file_best(std::string fname, size_t n_param_loc, double thresh=1.0e-6, size_t offset=5) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlinevirtual |
initial_points_file_dist(std::string fname, size_t n_param_loc, size_t offset=5) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlinevirtual |
initial_points_file_last(std::string fname, size_t n_param_loc, size_t offset=5) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlinevirtual |
internal_measure_t typedef | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
last_write_iters | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
last_write_time | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
low_copy | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
max_bad_steps | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
max_iters | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
max_time | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
mcmc(size_t n_params_local, vec_t &low, vec_t &high, std::vector< func_t > &func, std::vector< fill_t > &fill) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlinevirtual |
mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t >::mcmc(size_t n_params, vec_t &low, vec_t &high, std::vector< func_t > &func, std::vector< std::function< int(const vec_t &, double, size_t, int, bool, data_t &)> > &meas) | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | inlinevirtual |
mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t >::mcmc(size_t n_params, vec_t &low, vec_t &high, func_t &func, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)> &meas) | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | inlinevirtual |
mcmc_cleanup() | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlinevirtual |
mcmc_done | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | static |
mcmc_init() | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlineprotectedvirtual |
mcmc_para_base() (defined in o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t >) | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | inline |
mcmc_para_table() (defined in o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inline |
mcmc_skip | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | static |
mpi_rank | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
mpi_size | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
mpi_start_time | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
n_accept | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
n_chains_per_rank | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
n_params | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
n_reject | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
n_threads | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
n_walk | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
n_walk_per_thread | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
n_warm_up | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
p_aff_inv (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_file_update_iters (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_file_update_time (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_max_bad_steps (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_max_iters (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_max_time (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_n_walk (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_n_warm_up (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_prefix (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_step_fac (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_store_rejects (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_table_sequence (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_user_seed (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
p_verbose (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
parent_t typedef (defined in o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t >) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | protected |
pd_mode | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
post_pointmeas() | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlinevirtual |
prefix | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
prop_dist | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
reblock(size_t n_blocks) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inline |
reorder_table() | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlinevirtual |
ret_value_counts | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
rg | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
scr_out | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
set_names_units(std::vector< std::string > names, std::vector< std::string > units) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlinevirtual |
set_proposal(prob_vec_t &pv) | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | inline |
set_table(std::shared_ptr< o2scl::table_units<> > &t) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inline |
setup_cli(cli &cl) | o2scl::mcmc_para_cli< func_t, fill_t, data_t, vec_t > | inlinevirtual |
step_fac | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
store_rejects | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | |
switch_arr | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
table | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
table_io_chunk | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | |
table_sequence | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | |
unset_proposal() | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | inlinevirtual |
user_seed | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
verbose | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | |
walker_accept_rows | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
walker_reject_rows | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | protected |
warm_up | o2scl::mcmc_para_base< func_t, std::function< int(const vec_t &, double, size_t, int, bool, data_t &)>, data_t, vec_t > | protected |
write_files(bool sync_write=false) | o2scl::mcmc_para_table< func_t, fill_t, data_t, vec_t > | inlinevirtual |